These Lemon Chia Oat Muffins are light, zesty, and full of wholesome ingredients. I like that they’re naturally gluten-free, dairy-free, and made without traditional flour, making them a feel-good option that doesn’t skimp on flavor. The fresh lemon and chia seeds create a muffin that’s both refreshing and satisfying.

Lemon Chia Oat Muffins

Why You’ll Love This Recipe

I love how these muffins are quick to make and filled with healthy, pantry-staple ingredients. The lemon flavor is bright and fresh, the texture is soft and tender thanks to oat flour, and the chia seeds add a nutritional boost and a slight crunch. Whether I’m enjoying them for breakfast or as an afternoon snack, they always hit the spot.

ingredients

(Tip: You’ll find the full list of ingredients and measurements in the recipe card below.)

  • 1 3/4 cup oat flour (certified gluten-free)
  • 1/2 tsp baking soda
  • 1/2 tsp salt
  • 1/2 cup white sugar
  • 1/2 cup applesauce
  • 1/2 cup coconut oil, melted (or butter)
  • 2 tbsp lemon juice
  • Zest of 2 lemons
  • 2 tbsp almond milk (or milk of choice)
  • 1 tsp vanilla
  • 2 eggs
  • 1 tbsp chia seeds

directions

I preheat my oven to 350°F and line a muffin pan with cupcake liners or spray it with non-stick spray.

In a small mixing bowl, I stir together the oat flour, baking soda, and salt.

In a larger bowl, I whisk the sugar, applesauce, and melted coconut oil. Then I add lemon juice, lemon zest, almond milk, vanilla, and eggs, whisking everything together until it’s smooth and combined.

I pour the dry ingredients into the wet mixture and stir until just combined. Then I fold in the chia seeds.

Using a spoon or scoop, I fill each muffin cup about two-thirds full.

I bake for 15 to 18 minutes, until the tops are springy and a toothpick inserted into the center comes out clean.

Servings and timing

This recipe yields 12 muffins and takes about 33 minutes from start to finish: 15 minutes for prep and 18 minutes to bake.

Variations

Sometimes I mix in blueberries for an extra burst of fruit. I’ve also used maple syrup or coconut sugar instead of white sugar for a different sweetness. When I want a nutty note, I add chopped walnuts or almonds. You can also swap the eggs for flax eggs to keep them completely plant-based.

storage/reheating

I store the muffins in an airtight container at room temperature for up to 3 days, or in the fridge for up to a week. To reheat, I microwave them for 10–15 seconds to bring back their fresh-baked softness. I also freeze them for up to 2 months and thaw them overnight or warm them in the oven.

FAQs

Can I use regular flour instead of oat flour?

I usually stick to oat flour for the texture and gluten-free benefit, but you can use all-purpose flour if gluten isn’t a concern.

What can I use instead of coconut oil?

I sometimes use melted butter or a neutral oil like avocado oil as a substitute.

Can I make these muffins vegan?

Yes, I replace the eggs with flax eggs (1 tbsp ground flax + 3 tbsp water per egg) and they still turn out great.

Are these muffins sweet or more tart?

They have a balanced sweetness with a bright lemon flavor. I sometimes adjust the sugar slightly if I want them sweeter.

Can I use bottled lemon juice?

Fresh lemon juice gives the best flavor, but bottled works in a pinch. I make sure to include fresh zest for that extra lemony punch.

Are these muffins good for meal prep?

Absolutely. I make a batch ahead and keep them in the fridge or freezer for grab-and-go breakfasts.

Do I need to soak the chia seeds first?

No soaking needed—I just mix them right into the batter. They soften as they bake.

How do I make my own oat flour?

I blend rolled oats in a food processor or blender until fine. It’s quick and easy.

Can I reduce the sugar?

Yes, I often cut it down to 1/3 cup without affecting the texture too much.

Why did my muffins turn out dense?

I make sure not to overmix the batter and always double-check that my baking soda is fresh.

Conclusion

These Lemon Chia Oat Muffins are a refreshing and wholesome treat that I can feel good about eating. Whether I make them for breakfast, snacks, or a light dessert, they always deliver on flavor and texture. They’re a great go-to for anyone looking for a naturally gluten-free, dairy-free option that doesn’t compromise on taste.

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Lemon Chia Oat Muffins

Lemon Chia Oat Muffins


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  • Author: Amelia
  • Total Time: 33 minutes
  • Yield: 12 muffins

Description

Bright and Zesty Lemon Muffins with Nutty Chia Seeds, Made Flourless and Perfectly Gluten-Free


Ingredients

1 3/4 cup oat flour (certified gluten-free)

1/2 tsp baking soda

1/2 tsp salt

1/2 cup white sugar

1/2 cup applesauce

1/2 cup coconut oil, melted (or butter)

2 tbsp lemon juice

Zest of 2 lemons

2 tbsp almond milk (or milk of choice)

1 tsp vanilla extract

2 eggs

1 tbsp chia seeds


Instructions

Preheat your oven to 350°F (175°C). Line a muffin pan with cupcake liners or spray with non-stick spray.

In a small bowl, mix oat flour, baking soda, and salt.

In a large bowl, whisk together the sugar, applesauce, and melted coconut oil. Add lemon juice, lemon zest, almond milk, vanilla, and eggs. Whisk until well combined.

Stir the dry ingredients into the wet mixture until just combined. Fold in chia seeds.

Divide batter into muffin tins, filling each about 2/3 full.

Bake for 15–18 minutes, until tops are springy and a toothpick inserted in the center comes out clean.

  • Prep Time: 15 minutes
  • Cook Time: 18 minutes
  • Category: Breakfast

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